  | 2009 | 
| 41 |             | Matthias Bernt,
Ming-Chiang Chen,
Daniel Merkle,
Hung-Lung Wang,
Kun-Mao Chao,
Martin Middendorf:
Finding All Sorting Tandem Duplication Random Loss Operations.
CPM 2009: 301-313 | 
| 40 |             | Karl F. Doerner,
Daniel Merkle,
Thomas Stützle:
Special issue on ant colony optimization.
Swarm Intelligence 3(1): 1-2 (2009) | 
 | 2008 | 
| 39 |             | Christian Blum,
Daniel Merkle:
Swarm Intelligence: Introduction and Applications
Springer 2008 | 
| 38 |             | Alexander Scheidler,
Christian Blum,
Daniel Merkle,
Martin Middendorf:
Emergent Sorting in Networks of Router Agents.
ANTS Conference 2008: 299-306 | 
| 37 |             | Arne Brutschy,
Alexander Scheidler,
Daniel Merkle,
Martin Middendorf:
Learning from House-Hunting Ants: Collective Decision-Making in Organic Computing Systems.
ANTS Conference 2008: 96-107 | 
| 36 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree.
RECOMB-CG 2008: 143-157 | 
| 35 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Organic Computing and Swarm Intelligence.
Swarm Intelligence 2008: 253-281 | 
| 34 |             | Stefan Janson,
Daniel Merkle,
Martin Middendorf:
Molecular docking with multi-objective Particle Swarm Optimization.
Appl. Soft Comput. 8(1): 666-675 (2008) | 
| 33 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
Solving the Preserving Reversal Median Problem.
IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 332-347 (2008) | 
 | 2007 | 
| 32 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
A Fast and Exact Algorithm for the Perfect Reversal Median Problem.
ISBRA 2007: 305-316 | 
| 31 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
Using median sets for inferring phylogenetic trees.
Bioinformatics 23(2): 129-135 (2007) | 
| 30 |             | Matthias Bernt,
Daniel Merkle,
Kai Ramsch,
Guido Fritzsch,
Marleen Perseke,
Detlef Bernhard,
Martin Schlegel,
Peter F. Stadler,
Martin Middendorf:
CREx: inferring genomic rearrangements based on common intervals.
Bioinformatics 23(21): 2957-2958 (2007) | 
 | 2006 | 
| 29 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders.
CompLife 2006: 52-63 | 
| 28 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Self-organized task allocation for computing systems with reconfigurable components.
IPDPS 2006 | 
| 27 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Using Decentralized Clustering for Task Allocation in Networks with Reconfigurable Helper Units.
IWSOS/EuroNGI 2006: 137-147 | 
| 26 |             | Daniel Merkle,
Martin Middendorf:
Marco Dorigo and Thomas Stützle, Ant Colony Optimization, MIT Press (2004) ISBN 0-262-04219-3.
European Journal of Operational Research 168(1): 269-271 (2006) | 
| 25 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
Genome Rearrangement Based on Reversals that Preserve Conserved Intervals.
IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 275-288 (2006) | 
 | 2005 | 
| 24 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Dynamic Decentralized Packet Clustering in Networks.
EvoWorkshops 2005: 574-583 | 
| 23 |             | Stefan Janson,
Daniel Merkle:
A New Multi-objective Particle Swarm Optimization Algorithm Using Clustering Applied to Automated Docking.
Hybrid Metaheuristics 2005: 128-141 | 
| 22 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Modelling Ant Brood Tending Behavior with Cellular Automata.
International Conference on Computational Science (2) 2005: 412-419 | 
| 21 |             | Matthias Bernt,
Daniel Merkle,
Martin Middendorf:
A Parallel Algorithm for Solving the Reversal Median Problem.
PPAM 2005: 1089-1096 | 
| 20 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Decentralized packet clustering in router-based networks.
Int. J. Found. Comput. Sci. 16(2): 321-341 (2005) | 
| 19 |             | Daniel Merkle,
Martin Middendorf:
On solving permutation scheduling problems with ant colony optimization.
Int. J. Systems Science 36(5): 255-266 (2005) | 
| 18 |             | Daniel Merkle,
Christian Blum:
Swarm Intelligence - An Optimization-Based Introduction.
KI 19(4): 5-10 (2005) | 
 | 2004 | 
| 17 |             | Daniel Merkle,
Martin Middendorf:
Competition Controlled Pheromone Update for Ant Colony Optimization.
ANTS Workshop 2004: 95-105 | 
| 16 |             | Daniel Merkle,
Martin Middendorf,
Alexander Scheidler:
Decentralized Packet Clustering in Networks.
IPDPS 2004 | 
 | 2003 | 
| 15 |             | Daniel Merkle,
Martin Middendorf:
Ant Colony Optimization with Global Pheromone Evaluation for Scheduling a Single Machine.
Appl. Intell. 18(1): 105-111 (2003) | 
| 14 |             | Stefan Janson,
Daniel Merkle,
Martin Middendorf,
Hossam A. ElGindy,
Hartmut Schmeck:
On Enforced Convergence of ACO and its Implementation on the Reconfigurable Mesh Architecture Using Size Reduction Tasks.
The Journal of Supercomputing 26(3): 221-238 (2003) | 
 | 2002 | 
| 13 |             | Daniel Merkle,
Martin Middendorf:
Modelling ACO: Composed Permutation Problems.
Ant Algorithms 2002: 149-162 | 
| 12 |             | Jürgen Branke,
Michael Decker,
Daniel Merkle,
Hartmut Schmeck:
Coevolutionary Ant Algorithms Playing Games.
Ant Algorithms 2002: 298-299 | 
| 11 |             | Daniel Merkle,
Martin Middendorf:
Ant Colony Optimization with the Relative Pheromone Evaluation Method.
EvoWorkshops 2002: 325-333 | 
| 10 |             | Daniel Merkle,
Martin Middendorf:
Studies On The Dynamics Of Ant Colony Optimization Algorithms.
GECCO 2002: 105-112 | 
| 9 |             | Daniel Merkle,
Martin Middendorf:
Modeling the Dynamics of Ant Colony Optimization.
Evolutionary Computation 10(3): 235-262 (2002) | 
| 8 |             | Daniel Merkle,
Thomas Worsch:
Formal language recognition by stochastic cellular automata.
Fundam. Inform. 52(1-3): 183-201 (2002) | 
| 7 |             | Daniel Merkle,
Martin Middendorf:
Fast Ant Colony Optimization on Runtime Reconfigurable Processor Arrays.
Genetic Programming and Evolvable Machines 3(4): 345-361 (2002) | 
| 6 |             | Daniel Merkle,
Martin Middendorf,
Hartmut Schmeck:
Ant colony optimization for resource-constrained project scheduling.
IEEE Trans. Evolutionary Computation 6(4): 333-346 (2002) | 
 | 2001 | 
| 5 |             | Steffen Iredi,
Daniel Merkle,
Martin Middendorf:
Bi-Criterion Optimization with Multi Colony Ant Algorithms.
EMO 2001: 359-372 | 
| 4 |             | Daniel Merkle,
Martin Middendorf:
A New Approach to Solve Permutation Scheduling Problems with Ant Colony Optimization.
EvoWorkshops 2001: 484-494 | 
| 3 |             | Daniel Merkle,
Martin Middendorf:
Fast ant colony optimization on reconfigurable processor arrays.
IPDPS 2001: 144 | 
 | 2000 | 
| 2 |             | Daniel Merkle,
Martin Middendorf:
An Ant Algorithm with a New Pheromone Evaluation Rule for Total Tardiness Problems.
EvoWorkshops 2000: 287-296 | 
| 1 |             | Daniel Merkle,
Martin Middendorf,
Hartmut Schmeck:
Ant Colony Optimization for Resource-Constrained Projet Scheduling.
GECCO 2000: 893- |