Ting Chen

2007
65	EE	Ting Chen, Sohae Chung, Leon Axel: Automated Tag Tracking Using Gabor Filter Bank, Robust Point Matching, and Deformable Models. FIMH 2007: 22-31
64	EE	Xiaoxu Wang, Joel Schaerer, Suejung B. Huh, Zhen Qian, Dimitris N. Metaxas, Ting Chen, Leon Axel: Reconstruction of Detailed Left Ventricle Motion from tMRI Using Deformable Models. FIMH 2007: 60-69
63	EE	Piramanayagam Arumuga Nainar, Ting Chen, Jake Rosin, Ben Liblit: Statistical debugging using compound boolean predicates. ISSTA 2007: 5-15
62	EE	Ting Chen, Sohae Chung, Leon Axel: 2D Motion Analysis of Long Axis Cardiac Tagged MRI. MICCAI (2) 2007: 469-476
61	EE	Eric Chu, Akanksha Baid, Ting Chen, AnHai Doan, Jeffrey F. Naughton: A Relational Approach to Incrementally Extracting and Querying Structure in Unstructured Data. VLDB 2007: 1045-1056
60	EE	Debojyoti Dutta, Ting Chen: Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search. Bioinformatics 23(5): 612-618 (2007)
59	EE	Ting Chen, Frank K. Hwang: A competitive algorithm in searching for many edges in a hypergraph. Discrete Applied Mathematics 155(4): 566-571 (2007)
2006
58	EE	Vivy Suhendra, Tulika Mitra, Abhik Roychoudhury, Ting Chen: Efficient detection and exploitation of infeasible paths for software timing analysis. DAC 2006: 358-363
57	EE	Zhidong Tu, Li Wang, Michelle N. Arbeitman, Ting Chen, Fengzhu Sun: An integrative approach for causal gene identification and gene regulatory pathway inference. ISMB (Supplement of Bioinformatics) 2006: 489-496
56	EE	Biman Chakraborty, Ting Chen, Tulika Mitra, Abhik Roychoudhury: Handling Constraints in Multi-Objective GA for Embedded System Design. VLSI Design 2006: 305-310
55	EE	Debojyoti Dutta, Rajarshi Guha, Peter C. Jurs, Ting Chen: Scalable Partitioning and Exploration of Chemical Spaces Using Geometric Hashing. Journal of Chemical Information and Modeling 46(1): 321-333 (2006)
54	EE	Rajarshi Guha, Debojyoti Dutta, Peter C. Jurs, Ting Chen: R-NN Curves: An Intuitive Approach to Outlier Detection Using a Distance Based Method. Journal of Chemical Information and Modeling 46(4): 1713-1722 (2006)
53	EE	Rajarshi Guha, Debojyoti Dutta, Peter C. Jurs, Ting Chen: Local Lazy Regression: Making Use of the Neighborhood to Improve QSAR Predictions. Journal of Chemical Information and Modeling 46(4): 1836-1847 (2006)
2005
52	EE	Ping Guo, Yang Zhou, Jun Zhuang, Ting Chen, Yan-Rong Kang: An Efficient Algorithm for Mining Both Closed and Maximal Frequent Free Subtrees Using Canonical Forms. ADMA 2005: 96-107
51	EE	Leon Axel, Ting Chen, Tushar Manglik: Dense Myocardium Deformation Estimation for 2D Tagged MRI. FIMH 2005: 446-456
50	EE	Yunhu Wan, Ting Chen: A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search. RECOMB 2005: 342-356
49	EE	Vivy Suhendra, Tulika Mitra, Abhik Roychoudhury, Ting Chen: WCET Centric Data Allocation to Scratchpad Memory. RTSS 2005: 223-232
48	EE	Yao-Ting Huang, Kun-Mao Chao, Ting Chen: An approximation algorithm for haplotype inference by maximum parsimony. SAC 2005: 146-150
47	EE	Ting Chen, Jiaheng Lu, Tok Wang Ling: On Boosting Holism in XML Twig Pattern Matching using Structural Indexing Techniques. SIGMOD Conference 2005: 455-466
46	EE	Jiaheng Lu, Tok Wang Ling, Chee Yong Chan, Ting Chen: From Region Encoding To Extended Dewey: On Efficient Processing of XML Twig Pattern Matching. VLDB 2005: 193-204
45	EE	Jiaheng Lu, Ting Chen, Tok Wang Ling: TJFast: effective processing of XML twig pattern matching. WWW (Special interest tracks and posters) 2005: 1118-1119
44	EE	Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao: Selecting additional tag SNPs for tolerating missing data in genotyping. BMC Bioinformatics 6: 263 (2005)
43	EE	Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun: HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics 21(1): 131-134 (2005)
42	EE	Shih-Chieh Su, C. C. Jay Kuo, Ting Chen: Inference of missing SNPs and information quantity measurements for haplotype blocks. Bioinformatics 21(9): 2001-2007 (2005)
2004
41	EE	Jiaheng Lu, Ting Chen, Tok Wang Ling: Efficient processing of XML twig patterns with parent child edges: a look-ahead approach. CIKM 2004: 533-542
40	EE	Xiaolei Huang, Dimitris N. Metaxas, Ting Chen: MetaMorphs: Deformable Shape and Texture Models. CVPR (1) 2004: 496-503
39	EE	Daofeng Luo, Ting Chen, Tok Wang Ling, Xiaofeng Meng: On View Transformation Support for a Native XML DBMS. DASFAA 2004: 226-231
38	EE	Ting Chen, Tok Wang Ling, Chee Yong Chan: Prefix Path Streaming: A New Clustering Method for Optimal Holistic XML Twig Pattern Matching. DEXA 2004: 801-810
37	EE	Ting Chen, Dimitris N. Metaxas, Leon Axel: 3D Cardiac Anatomy Reconstruction Using High Resolution CT Data. MICCAI (1) 2004: 411-418
36	EE	Tushar Manglik, Alexandru Cernicanu, Vinay S. Pai, Daniel Kim, Ting Chen, Pradnya Dugal, Bharathi Batchu, Leon Axel: Gabor Filter-Based Automated Strain Computation from Tagged MR Images. MICCAI (2) 2004: 1064-1065
35	EE	Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao: Approximation Algorithms for the Selection of Robust Tag SNPs. WABI 2004: 278-289
34	EE	Yuan Fa, Ya Bing Chen, Tok Wang Ling, Ting Chen: Materialized View Maintenance for XML Documents. WISE 2004: 365-371
33	EE	Minghua Deng, Zhidong Tu, Fengzhu Sun, Ting Chen: Mapping gene ontology to proteins based on protein-protein interaction data. Bioinformatics 20(6): 895-902 (2004)
32	EE	Minghua Deng, Ting Chen, Fengzhu Sun: An Integrated Probabilistic Model for Functional Prediction of Proteins. Journal of Computational Biology 11(2/3): 463-475 (2004)
2003
31		Bingwen Lu, Ting Chen: A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications. ECCB 2003: 113-121
30	EE	Ting Chen, Dimitris N. Metaxas: Gibbs Prior Models, Marching Cubes, and Deformable Models: A Hybrid Framework for 3D Medical Image Segmentation. MICCAI (2) 2003: 703-710
29	EE	Minghua Deng, Fengzhu Sun, Ting Chen: Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing 2003: 140-151
28	EE	Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen: Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. RECOMB 2003: 332-340
27	EE	Minghua Deng, Ting Chen, Fengzhu Sun: An integrated probabilistic model for functional prediction of proteins. RECOMB 2003: 95-103
26	EE	Yong He, Ting Chen: A New Approximation Algorithm for Sorting of Signed Permutations. J. Comput. Sci. Technol. 18(1): 125-130 (2003)
25		Bingwen Lu, Ting Chen: A Suboptimal Algorithm for De Novo Peptide Sequencing via Tandem Mass Spectrometry. Journal of Computational Biology 10(1): 1-12 (2003)
24	EE	Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun: Prediction of Protein Function Using Protein-Protein Interaction Data. Journal of Computational Biology 10(6): 947-960 (2003)
2002
23	EE	Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun: Prediction of Protein Function Using Protein-Protein Interaction Data. CSB 2002: 197-206
22	EE	Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun: Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112
21	EE	Ting Chen, Dimitris N. Metaxas: Integration of Gibbs Prior Models and Deformable Models for 3D Medical Image Segmentation. ICPR (1) 2002: 719-722
20	EE	Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen: Inferring domain-domain interactions from protein-protein interactions. RECOMB 2002: 117-126
19	EE	Ting Chen, Q. H. Wu, Reza Rahmani-Torkaman, Jim Hughes: A pseudo top-hat mathematical morphological approach to edge detection in dark regions. Pattern Recognition 35(1): 199-210 (2002)
2001
18	EE	Celina Imielinska, Dimitris N. Metaxas, Jayaram K. Udupa, Yinpeng Jin, Ting Chen: Hybrid Segmentation of Anatomical Data. MICCAI 2001: 1048-1057
17	EE	Abbas El Gamal, Ting Chen: A Graduate Level Course on Image Sensors and Digital Cameras. MSE 2001: 102-
16	EE	Ting Chen: Gene-finding via tandem mass spectrometry. RECOMB 2001: 87-94
15	EE	Ting Chen, Jacob D. Jaffe, George M. Church: Algorithms for identifying protein cross-links via tandem mass spectrometry. RECOMB 2001: 95-102
14	EE	Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church: A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry CoRR cs.CE/0101016: (2001)
13		Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church: A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry. Journal of Computational Biology 8(3): 325-337 (2001)
12		Ting Chen, Jacob D. Jaffe, George M. Church: Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry. Journal of Computational Biology 8(6): 571-583 (2001)
11		Ting Chen, Vladimir Filkov, Steven Skiena: Identifying gene regulatory networks from experimental data. Parallel Computing 27(1-2): 141-162 (2001)
2000
10		Ting Chen, Dimitris N. Metaxas: Image Segmentation Based on the Integration of Markov Random Fields and Deformable Models. MICCAI 2000: 256-265
9	EE	Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church: A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry. SODA 2000: 389-398
8		Ting Chen, Steven Skiena: A case study in genome-level fragment assembly. Bioinformatics 16(6): 494-500 (2000)
1999
7	EE	Ting Chen, Ming-Yang Kao: On the Informational Asymmetry between Upper and Lower Bounds for Ultrametric Evolutionary Trees. ESA 1999: 248-256
6		Ethan L. Miller, Dan Shen, Junli Liu, Charles K. Nicholas, Ting Chen: Techniques for Gigabyte-Scale N-gram Based Information Retrieval on Personal Computers. PDPTA 1999: 1410-1416
5	EE	Ting Chen, Hongyu L. He, George M. Church: Modeling Gene Expression with Differential Equations. Pacific Symposium on Biocomputing 1999: 29-40
4	EE	Ting Chen, Vladimir Filkov, Steven Skiena: Identifying gene regulatory networks from experimental data. RECOMB 1999: 94-103
1997
3		Ting Chen, Steven Skiena: Trie-Based Data Structures for Sequence Assembly. CPM 1997: 206-223
1996
2	EE	Ting Chen, Steven Skiena: Sorting with Fixed-length Reversals. Discrete Applied Mathematics 71(1-3): 269-295 (1996)
1994
1		Ting Chen: Artificial Neural Networks for Motion Analysis. ICTAI 1994: 175-180

Coauthor Index

1	Michelle N. Arbeitman	[57]
2	Leon Axel	[36] [37] [51] [62] [64] [65]
3	Akanksha Baid	[61]
4	Bharathi Batchu	[36]
5	Alexandru Cernicanu	[36]
6	Biman Chakraborty	[56]
7	Chee Yong Chan	[38] [46]
8	Kun-Mao Chao	[35] [44] [48]
9	Ya Bing Chen	[34]
10	Eric Chu	[61]
11	Sohae Chung	[62] [65]
12	George M. Church	[5] [9] [12] [13] [14] [15]
13	Minghua Deng	[20] [23] [24] [27] [29] [32] [33]
14	AnHai Doan	[61]
15	Pradnya Dugal	[36]
16	Debojyoti Dutta	[53] [54] [55] [60]
17	Yuan Fa	[34]
18	Vladimir Filkov	[4] [11]
19	Abbas El Gamal (Abbas A. El Gamal)	[17]
20	Rajarshi Guha	[53] [54] [55]
21	Ping Guo	[52]
22	Hongyu L. He	[5]
23	Yong He	[26]
24	Xiaolei Huang	[40]
25	Yao-Ting Huang	[35] [44] [48]
26	Jim Hughes	[19]
27	Suejung B. Huh	[64]
28	Frank K. Hwang (Frank Kwang-Ming Hwang)	[59]
29	Celina Imielinska	[18]
30	Jacob D. Jaffe	[12] [15]
31	Yinpeng Jin	[18]
32	Peter C. Jurs	[53] [54] [55]
33	Yan-Rong Kang	[52]
34	Ming-Yang Kao	[7] [9] [13] [14]
35	Daniel Kim	[36]
36	C. C. Jay Kuo	[42]
37	Ben Liblit	[63]
38	Tok Wang Ling	[34] [38] [39] [41] [45] [46] [47]
39	Jun S. Liu	[22] [43]
40	Junli Liu	[6]
41	Bingwen Lu	[25] [31]
42	Jiaheng Lu	[41] [45] [46] [47]
43	Daofeng Luo	[39]
44	Tushar Manglik	[36] [51]
45	Shipra Mehta	[20] [23] [24]
46	Xiaofeng Meng	[39]
47	Dimitris N. Metaxas	[10] [18] [21] [30] [37] [40] [64]
48	Ethan L. Miller	[6]
49	Tulika Mitra	[49] [56] [58]
50	Piramanayagam Arumuga Nainar	[63]
51	Jeffrey F. Naughton	[61]
52	Charles K. Nicholas	[6]
53	Vinay S. Pai	[36]
54	Zhen Qian	[64]
55	Zhaohui S. Qin	[22] [43]
56	Reza Rahmani-Torkaman	[19]
57	Jake Rosin	[63]
58	Abhik Roychoudhury	[49] [56] [58]
59	John Rush	[9] [13] [14]
60	Joel Schaerer	[64]
61	Dan Shen	[6]
62	Steven Skiena	[2] [3] [4] [8] [11]
63	Shih-Chieh Su	[42]
64	Vivy Suhendra	[49] [58]
65	Fengzhu Sun	[20] [22] [23] [24] [27] [28] [29] [32] [33] [43] [57]
66	Matthew Tepel	[9] [13] [14]
67	Zhidong Tu	[33] [57]
68	Jayaram K. Udupa	[18]
69	Yunhu Wan	[50]
70	Li Wang	[57]
71	Xiaoxu Wang	[64]
72	Michael S. Waterman	[22] [28] [43]
73	Q. H. Wu	[19]
74	Kui Zhang	[22] [23] [24] [28] [35] [43] [44]
75	Yang Zhou	[52]
76	Jun Zhuang	[52]

Colors in the list of coauthors