Pattern Discovery in Biomolecular Data, 1999

@book{DBLP:books/ox/WangSS99,
  editor    = {Jason Tsong-Li Wang and
               Bruce A. Shapiro and
               Dennis Shasha},
  title     = {Pattern Discovery in Biomolecular Data: Tools, Techniques and
               Applications},
  publisher = {Oxford University Press},
  year      = {1999},
  isbn      = {0-19-511940-1},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

Part I: Finding Patterns in Sequences

• Aleksandar Milosavljevic: Discovering Patterns in DNA Sequences by the Algorithmic Significance Method. 3-23
• Jorja G. Henikoff: Assembling Blocks. 24-29
• Timothy L. Bailey, Michael E. Baker, Charles Elkan, William Noble Grundy: MEME, MAST, and Meta-MEME: New Tools for Motif Discovery in Protein Sequences. 30-54
• Jason Tsong-Li Wang, Thomas G. Marr, Steve Rozen, Dennis Shasha: Pattern Discovery and Classification in Biosequences. 55-74

Part II: Finding Patterns in 3D Structures

• Janice I. Glasgow, Evan W. Steeg, Suzanne Fortier: Motif Discovery in Protein Structure Databases. 77-96
• Kentaro Tomii, Minoru Kanehisa: Systematic Detection of Protein Structural Motifs. 97-110
• Isidore Rigoutsos, Daniel E. Platt, Andrea Califano, B. David Silverman: Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information. 111-129

Part III: System Components for Discovery

• Bin Li, Dennis Shasha, Jason Tsong-Li Wang: A Framework for Biological Pattern Discovery on Networks of Workstations. 133-144
• Diane J. Cook, Lawrence B. Holder, Gehad Galal: Discovering Concepts in Structural Data. 145-159
• David P. Yee, Judith Bayard Cushing, Tim Hunkapiller, Elizabeth Kutter: Overview: A System for Tracking and Managing the Results from Sequence Comparison Programs. 160-182
• Bruce A. Shapiro, Wojciech Kasprzak, Jin Chu Wu, Kathleen M. Currey: RNA Structure Analysis: A Multifaceted Approach. 183-215