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University of Georgia, Athens, GA, USA
List of publications from the DBLP Bibliography Server - FAQother persons with the same name:
| 2008 | ||
|---|---|---|
| 99 | EE | Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu: PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA 2008: 110-121 |
| 98 | EE | Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu: An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 51(4): 435-450 (2008) |
| 2007 | ||
| 97 | EE | Minghui Jiang, Ying Xu, Binhai Zhu: Protein Structure-Structure Alignment with Discrete Fr'echet Distance. APBC 2007: 131-141 |
| 96 | EE | Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. ISBRA 2007: 551-563 |
| 95 | EE | Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu: An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 48(4): 329-342 (2007) |
| 2006 | ||
| 94 | EE | Ying Xu, Fu-yuan Xu, Sheng-qi Li: A System for Project Distribution Based on the Semantic Matching Method. CIMCA/IAWTIC 2006: 187 |
| 93 | EE | Ying Xu, Fu-yuan Xu: Research on Context Modeling Based on Ontology. CIMCA/IAWTIC 2006: 188 |
| 92 | EE | Ying Xu, Fu-yuan Xu: Researching on The Method and Technology of Creating Temporal Categories for an Ontology of Time. CIMCA/IAWTIC 2006: 264 |
| 91 | EE | Yougang Song, Ying Xu, Brett D. Fleisch: Design and Performance Evaluation of a Proxy-based Java Rewriting Security System. ICDCS 2006: 11 |
| 90 | EE | Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai: Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) 2006: 307-313 |
| 89 | EE | Robin Kramer, Victor Olman, Ying Xu, Dong Xu: DigitalTree: A Tool for Displaying Biological Data in Tree Structure. International Conference on Computational Science (2) 2006: 855-862 |
| 88 | EE | Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai: Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing 2006: 255-266 |
| 87 | EE | Bo Yan, Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu: A Point-Process Model for Rapid Identification of Post-Translational Modifications. Pacific Symposium on Biocomputing 2006: 327-338 |
| 86 | EE | Xinglai Ji, Ying Xu: libSRES: a C library for stochastic ranking evolution strategy for parameter estimation. Bioinformatics 22(1): 124-126 (2006) |
| 85 | EE | Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu: CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinformatics 22(7): 894-896 (2006) |
| 84 | EE | Jean-Yves Potvin, Ying Xu, Ilham Benyahia: Vehicle routing and scheduling with dynamic travel times. Computers & OR 33: 1129-1137 (2006) |
| 83 | EE | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai: Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 423-432 (2006) |
| 82 | EE | Zhong Chen, Ying Xu: Structure Prediction of Helical Transmembrane Proteins at Two Length Scales. J. Bioinformatics and Computational Biology 4(2): 317-334 (2006) |
| 81 | EE | Victor Olman, Chindo Hicks, Peng Wang, Ying Xu: Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. J. Bioinformatics and Computational Biology 4(5): 999-1014 (2006) |
| 80 | EE | Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao: SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Research 34(Web-Server-Issue): 254-257 (2006) |
| 2005 | ||
| 79 | EE | Zhong Chen, Ying Xu: Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. CSB 2005: 203-207 |
| 78 | EE | Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu: Accurate Prediction of Orthologous Gene Groups in Microbes. CSB 2005: 73-79 |
| 77 | EE | Peng Wang, Bo Yan, Jun-tao Guo, Chindo Hicks, Ying Xu: Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. CSB Workshops 2005: 217- |
| 76 | EE | Guojun Li, Jizhu Lu, Victor Olman, Ying Xu: PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. CSB Workshops 2005: 35-36 |
| 75 | EE | PhuongAn Dam, Victor Olman, Ying Xu: Improving Operon Prediction in E. coli. CSB Workshops 2005: 69-70 |
| 74 | EE | Junfeng Tian, Yue Fu, Ying Xu, Jian-ling Wang: Intrusion Detection Combining Multiple Decision Trees by Fuzzy logic. PDCAT 2005: 256-258 |
| 73 | EE | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai: Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388 |
| 72 | EE | Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu: A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinformatics 21(5): 563-574 (2005) |
| 71 | EE | Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Bo-Shu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong: MPSS: an integrated database system for surveying a set of proteins. Bioinformatics 21(9): 2142-2143 (2005) |
| 70 | EE | Guojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu: On Connected [g, f +1]-Factors in Graphs. Combinatorica 25(4): 393-405 (2005) |
| 69 | EE | Ying Xu, Roch Guérin: On the robustness of router-based denial-of-service (DoS) defense systems. Computer Communication Review 35(3): 47-60 (2005) |
| 68 | EE | Ying Xu, Roch Guérin: Individual QoS versus aggregate QoS: a loss performance study. IEEE/ACM Trans. Netw. 13(2): 370-383 (2005) |
| 67 | EE | ZhenQiu Liu, Dechang Chen, Ying Xu, Jian Liu: Logistic support vector machines and their application to gene expression data. IJBRA 1(2): 169-182 (2005) |
| 66 | EE | ZhenQiu Liu, Dechang Chen, Halima Bensmail, Ying Xu: Clustering Gene Expression Data with Kernel Principal Components. J. Bioinformatics and Computational Biology 3(2): 303-316 (2005) |
| 65 | EE | Tema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst, Vladimir Protopopescu, Ying Xu: The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. J. Bioinformatics and Computational Biology 3(2): 455-476 (2005) |
| 64 | EE | Ying Xu, Liming Cai, Zhiping Weng: Preface. J. Comput. Sci. Technol. 20(4): 433-433 (2005) |
| 63 | EE | Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu: PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. J. Comput. Sci. Technol. 20(4): 483-490 (2005) |
| 62 | EE | Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang: More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Journal of Computational Biology 12(2): 129-146 (2005) |
| 2004 | ||
| 61 | EE | Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu: Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. BIBE 2004: 5-8 |
| 60 | EE | Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu: Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB 2004: 236-244 |
| 59 | EE | Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu: Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB 2004: 363-370 |
| 58 | EE | Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu: A Knowledge Base for Computational Pathway Reconstruction. CSB 2004: 612-613 |
| 57 | EE | PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu: In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. CSB 2004: 614-615 |
| 56 | EE | Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu: Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. CSB 2004: 640-641 |
| 55 | EE | Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu: Pathway Mapping with Operon Information: An Integer-Programming Method. CSB 2004: 642-643 |
| 54 | EE | Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu: CUBIC: Search for Binding Sites. CSB 2004: 666-667 |
| 53 | EE | Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu: Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. CSB 2004: 700-701 |
| 52 | EE | Jun-tao Guo, Ying Xu: Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. CSB 2004: 708-709 |
| 51 | EE | Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang: Exploring the Performance Benefits of End-to-End Path Switching. ICNP 2004: 304-315 |
| 50 | EE | Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu: Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. Pacific Symposium on Biocomputing 2004: 459-470 |
| 49 | EE | Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang: Exploring the performance benefits of end-to-end path switching. SIGMETRICS 2004: 418-419 |
| 48 | EE | Ying Xu, Xiaoyu Song, Eduard Cerny, Otmane Aït Mohamed: Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs (MDGs). Comput. J. 47(1): 71-84 (2004) |
| 47 | EE | Ying Xu, Brett D. Fleisch: NFS-cc: tuning NFS for concurrent read sharing. IJHPCN 1(4): 203-213 (2004) |
| 46 | EE | Jinbo Xu, Ming Li, Ying Xu: Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. 8(4): 403-418 (2004) |
| 45 | Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu: PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Nucleic Acids Research 32(Web-Server-Issue): 522-525 (2004) | |
| 2003 | ||
| 44 | EE | Yu Chen, Trupti Joshi, Ying Xu, Dong Xu: Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. BIBE 2003: 18-25 |
| 43 | EE | Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu: A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE 2003: 3-10 |
| 42 | EE | Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu: A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423 |
| 41 | EE | Victor Olman, Dong Xu, Ying Xu: CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. CSB 2003: 448-449 |
| 40 | EE | Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, B. Palenik, Ying Xu: Computational Inference of Regulatory Pathways in Microbes. CSB 2003: 631-633 |
| 39 | EE | Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu: More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. ESA 2003: 580-592 |
| 38 | EE | Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu: Protein Threading by Linear Programming. Pacific Symposium on Biocomputing 2003: 264-275 |
| 37 | EE | Victor Olman, Dong Xu, Ying Xu: Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Pacific Symposium on Biocomputing 2003: 327-338 |
| 36 | EE | Ying Xu, Roch Guérin: On Evaluating Loss Performance Deviation: A Simple Tool and Its Practical Implications. QoS-IP 2003: 1-18 |
| 35 | Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu: A computational pipeline for protein structure prediction and analysis at genome scale. Bioinformatics 19(15): 1985-1996 (2003) | |
| 34 | EE | Huandong Sun, Ming Li, Ying Xu: MOLVIE: an interactive visualization environment for molecular structures. Computer Methods and Programs in Biomedicine 71(1): 85-90 (2003) |
| 33 | EE | Victor Olman, Dong Xu, Ying Xu: Cubic: Identification of Regulatory Binding Sites through Data Clustering. J. Bioinformatics and Computational Biology 1(1): 21-40 (2003) |
| 32 | EE | Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu: Raptor: Optimal Protein Threading by Linear Programming. J. Bioinformatics and Computational Biology 1(1): 95-118 (2003) |
| 31 | EE | Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu: Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. J. Bioinformatics and Computational Biology 1(2): 387-410 (2003) |
| 30 | EE | Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu: Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. 1-3(299): 211-229 (2003) |
| 2002 | ||
| 29 | EE | Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu: An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. CSB 2002: 165-174 |
| 28 | EE | Ying Xu, Roch Guérin: Individual QoS versus Aggregate QoS: A Loss Performance Study. INFOCOM 2002 |
| 27 | EE | Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu: Improved Approximation Algorithms for NMR Spectral Peak Assignment. WABI 2002: 82-96 |
| 26 | Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, Ying Xu: PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinformatics 18(11): 1432-1437 (2002) | |
| 25 | Ying Xu, Victor Olman, Dong Xu: Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinformatics 18(4): 536-545 (2002) | |
| 2000 | ||
| 24 | EE | Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu: Protein structure determination using protein threading and sparse NMR data (extended abstract). RECOMB 2000: 299-307 |
| 23 | Ying Xu, Dong Xu, Harold N. Gabow: Protein domain decomposition using a graph-theoretic approach. Bioinformatics 16(12): 1091-1104 (2000) | |
| 22 | Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher: Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinformatics 16(3): 269-285 (2000) | |
| 21 | Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein: A Computational Method for NMR-Constrained Protein Threading. Journal of Computational Biology 7(3-4): 449-467 (2000) | |
| 1999 | ||
| 20 | EE | Ying Xu, Eduard Cerny, Allan Silburt, A. Coady, Ying Liu, Philip Pownall: Practical Application of Formal Verification Techniques on a Frame Mux/Demux Chip from Nortel Semiconductors. CHARME 1999: 110-124 |
| 19 | Ying Xu, Satoru Miyano, Tom Head: Foreword. J. Comb. Optim. 3(2-3): 147-148 (1999) | |
| 1998 | ||
| 18 | Ying Xu, Eduard Cerny, Xiaoyu Song, Francisco Corella, Otmane Aït Mohamed: Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs. CAV 1998: 219-231 | |
| 17 | EE | Ying Xu, Dong Xu, Edward C. Uberbacher: A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292 |
| 16 | Ying Xu, Dong Xu, Edward C. Uberbacher: An Efficient Computational Method for Globally Optimal Threading. Journal of Computational Biology 5(3): 597- (1998) | |
| 15 | EE | Ying Xu, Victor Olman, Edward C. Uberbacher: A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognition Letters 19(13): 1213-1224 (1998) |
| 1997 | ||
| 14 | Ying Xu, Richard J. Mural, Edward C. Uberbacher: Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353 | |
| 13 | EE | Ying Xu, Edward C. Uberbacher: Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336 |
| 12 | EE | Ying Xu, Edward C. Uberbacher: 2D image segmentation using minimum spanning trees. Image Vision Comput. 15(1): 47-57 (1997) |
| 11 | Ying Xu, Edward C. Uberbacher: Automated Gene Identification in Large-Scale Genomic Sequences. Journal of Computational Biology 4(3): 325-338 (1997) | |
| 1996 | ||
| 10 | K. D. Anon, N. Boulerice, Eduard Cerny, Francisco Corella, Michel Langevin, Xiaoyu Song, Sofiène Tahar, Ying Xu, Zijian Zhou: MDG Tools for the Verification of RTL Designs. CAV 1996: 433-436 | |
| 9 | Ying Xu, Edward C. Uberbacher: Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251 | |
| 8 | Ying Xu, Edward C. Uberbacher: A polynomial-time algorithm for a class of protein threading problems. Computer Applications in the Biosciences 12(6): 511-517 (1996) | |
| 7 | EE | Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher: Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Computers & Chemistry 20(1): 135-140 (1996) |
| 6 | Harold N. Gabow, Ying Xu: Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. J. Comput. Syst. Sci. 53(1): 129-147 (1996) | |
| 5 | Ying Xu, Richard J. Mural, Edward C. Uberbacher: An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. Journal of Computational Biology 3(3): 333-344 (1996) | |
| 1995 | ||
| 4 | Ying Xu, Richard J. Mural, Edward C. Uberbacher: Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Computer Applications in the Biosciences 11(2): 117-124 (1995) | |
| 1994 | ||
| 3 | Ying Xu, Harold N. Gabow: Fast Algorithms for Transversal Matroid Intersection Problems ISAAC 1994: 625-633 | |
| 2 | Ying Xu, Richard J. Mural, Edward C. Uberbacher: Constructing gene models from accurately predicted exons: an application of dynamic programming. Computer Applications in the Biosciences 10(6): 613-623 (1994) | |
| 1989 | ||
| 1 | Harold N. Gabow, Ying Xu: Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids FOCS 1989: 106-111 | |