Toshihisa Takagi

2007
38	EE	Wataru Iwasaki, Toshihisa Takagi: Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. ISMB/ECCB (Supplement of Bioinformatics) 2007: 230-239
37	EE	Asako Koike, Toshihisa Takagi: Knowledge discovery based on an implicit and explicit conceptual network. JASIST 58(1): 51-65 (2007)
36	EE	Yasunori Yamamoto, Toshihisa Takagi: Biomedical knowledge navigation by literature clustering. Journal of Biomedical Informatics 40(2): 114-130 (2007)
2006
35	EE	Tatsuya Kushida, Toshihisa Takagi, Ken-ichiro Fukuda: Event Ontology: A Pathway-Centric Ontology for Biological Processes. Pacific Symposium on Biocomputing 2006: 152-163
2005
34	EE	Yasunori Yamamoto, Toshihisa Takagi: A Sentence Classification System for Multi Biomedical Literature Summarization. ICDE Workshops 2005: 1163
33	EE	Asako Koike, Yoshiki Niwa, Toshihisa Takagi: Automatic extraction of gene/protein biological functions from biomedical text. Bioinformatics 21(7): 1227-1236 (2005)
32	EE	Kikuya Kato, Riu Yamashita, Ryo Matoba, Morito Monden, Shinzaburo Noguchi, Toshihisa Takagi, Kenta Nakai: Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues. Nucleic Acids Research 33(Database-Issue): 533-536 (2005)
2004
31	EE	Ken-ichiro Fukuda, Toshihisa Takagi: A Pathway Editor for Literature-based Knowledge Curation. APBC 2004: 339-344
30	EE	Shinsuke Dohkan, Asako Koike, Toshihisa Takagi: Prediction of Protein-Protein Interactions Using Support Vector Machines. BIBE 2004: 576-586
29		Yasunori Yamamoto, Toshihisa Takagi: A Practical Partial Parser for Biomedical Literature Summarization. NLUCS 2004: 75-85
28	EE	Goro Terai, Toshihisa Takagi: Predicting rules on organization of cis-regulatory elements, taking the order of elements into account. Bioinformatics 20(7): 1119-1128 (2004)
27	EE	Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano: Large-scale collection and characterization of promoters of human and mouse genes. In Silico Biology 4: (2004)
26	EE	Asako Koike, Toshihisa Takagi: PRIME: automatically extracted PRotein Interactions and Molecular Information databas. In Silico Biology 5: (2004)
25	EE	Takako Takai-Igarashi, Toshihisa Takagi, Holger Michael, Edgar Wingender: Preface - Third "Ontology Workshop on Ontology and Genomes". In Silico Biology 5: (2004)
2003
24	EE	Tetsushi Yada, Yasushi Totoki, Y. Takaeda, Yasubumi Sakaki, Toshihisa Takagi: DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. Pacific Symposium on Biocomputing 2003: 375-387
23	EE	Hiroko Ao, Yasunori Yamamoto, Toshihisa Takagi: A Method to Retrieve Papers from MEDLINE: PETER System. TREC 2003: 806-809
22		Natalia V. Poluliakh, Toshihisa Takagi, Kenta Nakai: MELINA: motif extraction from promoter regions of potentially co-regulated genes. Bioinformatics 19(3): 423-424 (2003)
21	EE	Ken-ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi: FREX: A query interface for biological processes with hierarchical and recursive structures. In Silico Biology 4: (2003)
20	EE	Takako Takai-Igarashi, Toshihisa Takagi, Edgar Wingender: Preface. In Silico Biology 4: (2003)
2002
19		Mika Hirakawa, Toshihiro Tanaka, Yoichi Hashimoto, Masako Kuroda, Toshihisa Takagi, Yusuke Nakamura: JSNP: a database of common gene variations in the Japanese population. Nucleic Acids Research 30(1): 158-162 (2002)
2001
18		Takako Takai-Igarashi, Toshihisa Takagi: Ontology and functional genomics. German Conference on Bioinformatics 2001: 46
17		Toshihide Ono, Haretsugu Hishigaki, Akira Tanigami, Toshihisa Takagi: Automated extraction of information on protein-protein interactions from the biological literature. Bioinformatics 17(1): 155-161 (2001)
16		Ken-ichiro Fukuda, Toshihisa Takagi: Knowledge representation of signal transduction pathways. Bioinformatics 17(9): 829-837 (2001)
2000
15		Mikio Yoshida, Ken-ichiro Fukuda, Toshihisa Takagi: PNAD-CSS: a workbench for constructing a protein name abbreviation dictionary. Bioinformatics 16(2): 169-175 (2000)
1999
14	EE	Tatsuhiko Tsunoda, Masao Fukagawa, Toshihisa Takagi: Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences. Pacific Symposium on Biocomputing 1999: 202-213
13		Tatsuhiko Tsunoda, Toshihisa Takagi: Estimating transcription factor bindability on DNA. Bioinformatics 15(7): 622-630 (1999)
1997
12		Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, Toshihisa Takagi: Automatic Construction of Knowledge Base from Biological Papers. ISMB 1997: 218-225
11		Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi: Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB 1997: 254-257
10		Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara: Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Computer Applications in the Biosciences 13(2): 183-190 (1997)
1994
9		Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi: A Deductive Object-Oriented Language for Integrated Genome Databaser. HICSS (5) 1994: 108-110
8		Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi: Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) 1994: 160-170
7		Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa: Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76
1993
6	EE	Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi: Object-Oriented Database with Rule-Based Query Interface for Genomic Computation. DASFAA 1993: 65-72
5		Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara: A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Computer Applications in the Biosciences 9(3): 259-265 (1993)
4		Norihiro Sakamoto, Toshihisa Takagi, Yasubumi Sakaki: Development of the Overlapping Oligonucleotide Database and its application to signal sequence search of the human genome. Computer Applications in the Biosciences 9(4): 427-434 (1993)
1990
3		Neng-Fa Zhou, Toshihisa Takagi, Kazuo Ushijima: A Matching Tree Oriented Abstract Machine for Prolog. ICLP 1990: 159-173
1985
2		Toshihisa Takagi, Fumihiro Matsuo, Shouichi Futamura, Kazuo Ushijima: Implementation of Inferential Relational Database System. FODO 1985: 539-546
1984
1		Satoru Kuhara, Fumihiro Matsuo, Shouichi Futamura, A. Fujita, Takeshi Shinohara, Toshihisa Takagi, Yasubumi Sakaki: GENAS: a database system for nucleic acid sequence analysis. Nucleic Acids Research 12(1): 89-99 (1984)

Coauthor Index

1	Hiroko Ao	[23]
2	Takahiro Arakawa	[27]
3	Piero Carninci	[27]
4	Joe Chiba	[27]
5	Shinsuke Dohkan	[30]
6	A. Fujita	[1]
7	Masao Fukagawa	[14]
8	Ken-ichiro Fukuda	[15] [16] [21] [31] [35]
9	Emiko Furuichi	[5] [8] [10] [11]
10	Shouichi Futamura	[1] [2]
11	Susumu Goto	[6] [9]
12	Yoichi Hashimoto	[19]
13	Yoshihide Hayashizaki	[27]
14	Mika Hirakawa	[19]
15	Haretsugu Hishigaki	[17]
16	Wataru Iwasaki	[38]
17	Minoru Kanehisa	[7]
18	Kikuya Kato	[32]
19	Jun Kawai	[27]
20	Alexander E. Kel	[27]
21	Asako Koike	[26] [30] [33] [37]
22	Satoru Kuhara	[1] [5] [7] [8] [10] [11]
23	Masako Kuroda	[19]
24	Tatsuya Kushida	[35]
25	Ryo Matoba	[32]
26	Fumihiro Matsuo	[1] [2]
27	Holger Michael	[25]
28	Junko Mizushima-Sugano	[27]
29	Morito Monden	[32]
30	Kenta Nakai	[22] [27] [32]
31	Yusuke Nakamura	[19]
32	Yoshiki Niwa	[33]
33	Shinzaburo Noguchi	[32]
34	Yoshihiro Ohta	[12]
35	Tomoko Okazaki	[12]
36	Toshihide Ono	[11] [17]
37	Natalia V. Poluliakh	[22]
38	Yasubumi Sakaki	[1] [4] [24]
39	Yuta Sakakibara	[27]
40	Norihiro Sakamoto	[4] [6] [9]
41	Kenji Satou	[5] [8] [10] [11]
42	Takeshi Shinohara	[1]
43	Matsuyuki Shirota	[27]
44	Sumio Sugano	[27]
45	Takahiko Suzuki	[7]
46	Yutaka Suzuki	[27]
47	Y. Takaeda	[24]
48	Takako Takai-Igarashi	[18] [20] [25]
49	Kyoko Takiguchi	[5] [8] [10]
50	Toshihiro Tanaka	[19]
51	Akira Tanigami	[17]
52	Goro Terai	[28]
53	Yasushi Totoki	[24]
54	Y. Tsukamoto	[10]
55	Tatsuhiko Tsunoda	[13] [14]
56	Ikuo Uchiyama	[12]
57	Kazuo Ushijima	[2] [3]
58	Edgar Wingender	[20] [25]
59	Tetsushi Yada	[24]
60	Yuki Yamagata	[21]
61	Yasunori Yamamoto	[12] [23] [29] [34] [36]
62	Yoshihisa Yamamura	[11]
63	Riu Yamashita	[27] [32]
64	Mikio Yoshida	[15]
65	Neng-Fa Zhou	[3]

Colors in the list of coauthors