John Quackenbush

2007
14	EE	John Quackenbush: Stochasticity and Networks in Genomic Data. BIBE 2007: 2
13	EE	Jun S. Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X. Shirley Liu: Microarray blob-defect removal improves array analysis. Bioinformatics 23(8): 966-971 (2007)
2006
12	EE	John Quackenbush, Steven Salzberg: It is time to end the patenting of software. Bioinformatics 22(12): 1416-1417 (2006)
11	EE	Agnes P. Chan, Geo Pertea, Foo Cheung, Dan Lee, Li Zheng, Cathy Whitelaw, Ana C. Pontaroli, Phillip SanMiguel, Yinan Yuan, Jeffrey Bennetzen, William Brad Barbazuk, John Quackenbush, Pablo D. Rabinowicz: The TIGR Maize Database. Nucleic Acids Research 34(Database-Issue): 771-776 (2006)
2005
10	EE	Adam A. Margolin, Joel Greshock, Tara L. Naylor, Yael Mosse, John M. Maris, Graham Bignell, Alexander I. Saeed, John Quackenbush, Barbara L. Weber: CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data. Bioinformatics 21(15): 3308-3311 (2005)
9	EE	Amira Djebbari, Svetlana Karamycheva, Eleanor Howe, John Quackenbush: MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms. Bioinformatics 21(15): 3324-3326 (2005)
8	EE	Yuandan Lee, Jennifer Tsai, S. Sunkara, Svetlana Karamycheva, Geo Pertea, Razvan Sultana, Valentin Antonescu, Agnes P. Chan, Foo Cheung, John Quackenbush: The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Nucleic Acids Research 33(Database-Issue): 71-74 (2005)
2003
7	EE	Richard Tong, John Quackenbush, Mark Snuffin: Knowledge-Based Access to the Bio-Medical Literature, Ontologically-Grounded Experiments for the TREC 2003 Genomics Track. TREC 2003: 547-551
6		Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush: TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5): 651-652 (2003)
5		Qiaoping Yuan, Shu Ouyang, Jia Liu, Bernard Suh, Foo Cheung, Razvan Sultana, Daniel Lee, John Quackenbush, C. Robin Buell: The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Research 31(1): 229-233 (2003)
2002
4		Alexander Sturn, John Quackenbush, Zlatko Trajanoski: Genesis: cluster analysis of microarray data. Bioinformatics 18(1): 207-208 (2002)
3		Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
2001
2		John Quackenbush, Jennifer Cho, Daniel Lee, Feng Liang, Ingeborg Holt, Svetlana Karamycheva, Babak Parvizi, Geo Pertea, Razvan Sultana, Joseph White: The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Research 29(1): 159-164 (2001)
2000
1		John Quackenbush, Feng Liang, Ingeborg Holt, Geo Pertea, Jonathan Upton: The TIGR Gene Indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research 28(1): 141-145 (2000)

Coauthor Index

1	Valentin Antonescu	[6] [8]
2	Catherine A. Ball	[3]
3	William Brad Barbazuk	[11]
4	Jeffrey Bennetzen	[11]
5	Graham Bignell	[10]
6	Alvis Brazma	[3]
7	Catherine Brooksbank	[3]
8	C. Robin Buell	[5]
9	Helen C. Causton	[3]
10	Duccio Cavalieri	[3]
11	Agnes P. Chan	[8] [11]
12	Foo Cheung	[5] [6] [8] [11]
13	Jennifer Cho	[2]
14	Amira Djebbari	[9]
15	Edward Fox	[13]
16	Terry Gaasterland	[3]
17	Joel Greshock	[10]
18	Pascal Hingamp	[3]
19	Frank Holstege	[3]
20	Ingeborg Holt	[1] [2]
21	Eleanor Howe	[9]
22	Xiaoqiu Huang	[6]
23	Svetlana Karamycheva	[2] [6] [8] [9]
24	Dan Lee	[11]
25	Daniel Lee	[2] [5]
26	Yuandan Lee	[6] [8]
27	Wei Li	[13]
28	Feng Liang	[1] [2] [6]
29	Jia Liu	[5]
30	X. Shirley Liu	[13]
31	Kaveh Maghsoudi	[13]
32	Adam A. Margolin	[10]
33	John M. Maris	[10]
34	Yael Mosse	[10]
35	Tara L. Naylor	[10]
36	Shu Ouyang	[5]
37	Helen E. Parkinson	[3]
38	Babak Parvizi	[2] [6]
39	Geo Pertea	[1] [2] [6] [8] [11]
40	Ana C. Pontaroli	[11]
41	Pablo D. Rabinowicz	[11]
42	Martin Ringwald	[3]
43	Philippe Rocca-Serra	[3]
44	Alexander I. Saeed	[10]
45	Steven Salzberg	[12]
46	Phillip SanMiguel	[11]
47	Gavin Sherlock	[3]
48	Mark Snuffin	[7]
49	Jun S. Song	[13]
50	Paul T. Spellman	[3]
51	Jason E. Stewart	[3]
52	Christian J. Stoeckert Jr.	[3]
53	Alexander Sturn	[4]
54	Bernard Suh	[5]
55	Razvan Sultana	[2] [5] [6] [8]
56	S. Sunkara	[8]
57	Ronald Taylor	[3]
58	Richard Tong	[7]
59	Zlatko Trajanoski	[4]
60	Jennifer Tsai	[6] [8]
61	Jonathan Upton	[1]
62	Barbara L. Weber	[10]
63	Joseph White	[2] [6]
64	Cathy Whitelaw	[11]
65	Qiaoping Yuan	[5]
66	Yinan Yuan	[11]
67	Li Zheng	[11]

Colors in the list of coauthors