Minoru Kanehisa

2008
51	EE	Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa: AAindex: amino acid index database, progress report 2008. Nucleic Acids Research 36(Database-Issue): 202-205 (2008)
50	EE	Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi: KEGG for linking genomes to life and the environment. Nucleic Acids Research 36(Database-Issue): 480-484 (2008)
49	EE	Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka: A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology. TKDD 2(1): (2008)
2007
48	EE	Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Inference of Protein-Protein Interactions by Using Co-evolutionary Information. AB 2007: 322-333
47	EE	Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa: The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs). Bioinformatics 23(16): 2129-2138 (2007)
46	EE	Yuki Moriya, Masumi Itoh, Shujiro Okuda, Akiyasu C. Yoshizawa, Minoru Kanehisa: KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Research 35(Web-Server-Issue): 182-185 (2007)
45	EE	Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima, Joe Mellor, Bolan Linghu, Minoru Kanehisa, Joshua M. Stuart, Charles DeLisi: VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research 35(Web-Server-Issue): 625-632 (2007)
2006
44	EE	Kiyoko F. Aoki-Kinoshita, Minoru Kanehisa, Ming-Yang Kao, Xiang-Yang Li, Weizhao Wang: A 6-Approximation Algorithm for Computing Smallest Common AoN-Supertree with Application to the Reconstruction of Glycan Trees. ISAAC 2006: 100-110
43	EE	Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Hiroshi Mamitsuka, Minoru Kanehisa: ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains. ISMB (Supplement of Bioinformatics) 2006: 25-34
42	EE	Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu: Identification of metabolic units induced by environmental signals. ISMB (Supplement of Bioinformatics) 2006: 375-383
41	EE	Kosuke Hashimoto, Kiyoko F. Aoki-Kinoshita, Nobuhisa Ueda, Minoru Kanehisa, Hiroshi Mamitsuka: A new efficient probabilistic model for mining labeled ordered trees. KDD 2006: 177-186
40	EE	Takuji Yamada, Minoru Kanehisa, Susumu Goto: Extraction of phylogenetic network modules from the metabolic network. BMC Bioinformatics 7: 130 (2006)
39	EE	Jean-Marc Schwartz, Minoru Kanehisa: Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinformatics 7: 186 (2006)
38	EE	Tetsuya Sato, Yoshihiro Yamanishi, Katsuhisa Horimoto, Minoru Kanehisa, Hiroyuki Toh: Partial correlation coefficient between distance matrices as a new indicator of protein-protein interactions. Bioinformatics 22(20): 2488-2492 (2006)
37	EE	Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa: From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Research 34(Database-Issue): 354-357 (2006)
36	EE	Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa: ODB: a database of operons accumulating known operons across multiple genomes. Nucleic Acids Research 34(Database-Issue): 358-362 (2006)
35	EE	Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto: EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research 34(Web-Server-Issue): 459-462 (2006)
2005
34	EE	Jean-Marc Schwartz, Minoru Kanehisa: A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. ECCB/JBI 2005: 205
33	EE	Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Supervised enzyme network inference from the integration of genomic data and chemical information. ISMB (Supplement of Bioinformatics) 2005: 468-477
32	EE	Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh: The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics 21(17): 3482-3489 (2005)
31	EE	Shin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa: Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinformatics 21(21): 3976-3982 (2005)
30	EE	Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa: Fast and accurate database homology search using upper bounds of local alignment scores. Bioinformatics 21(7): 912-921 (2005)
29	EE	Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa: A score matrix to reveal the hidden links in glycans. Bioinformatics 21(8): 1457-1463 (2005)
28	EE	Yoshinori Tamada, Hideo Bannai, Seiya Imoto, Toshiaki Katayama, Minoru Kanehisa, Satoru Miyano: Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models. J. Bioinformatics and Computational Biology 3(6): 1295-1314 (2005)
2004
27	EE	Yoshihiro Yamanishi, Jean-Philippe Vert, Minoru Kanehisa: Protein network inference from multiple genomic data: a supervised approach. ISMB/ECCB (Supplement of Bioinformatics) 2004: 363-370
26	EE	Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka: Application of a new probabilistic model for recognizing complex patterns in glycans. ISMB/ECCB (Supplement of Bioinformatics) 2004: 6-14
25	EE	Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu: Clustering under the line graph transformation: application to reaction network. BMC Bioinformatics 5: 207 (2004)
24		Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori: The KEGG resource for deciphering the genome. Nucleic Acids Research 32(Database-Issue): 277-280 (2004)
23		Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa: KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Nucleic Acids Research 32(Web-Server-Issue): 267-272 (2004)
22	EE	Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka: Managing and Analyzing Carbohydrate Data. SIGMOD Record 33(2): 33-38 (2004)
2003
21		Jean-Philippe Vert, Minoru Kanehisa: Extracting active pathways from gene expression data. ECCB 2003: 238-244
20	EE	Yoshihiro Yamanishi, Jean-Philippe Vert, A. Nakaya, Minoru Kanehisa: Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis. ISMB (Supplement of Bioinformatics) 2003: 323-330
19		Keun-Joon Park, Minoru Kanehisa: Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics 19(13): 1656-1663 (2003)
2002
18	EE	Jean-Philippe Vert, Minoru Kanehisa: Graph-Driven Feature Extraction From Microarray Data Using Diffusion Kernels and Kernel CCA. NIPS 2002: 1425-1432
17		Takeshi Kawashima, Shuichi Kawashima, Yuji Kohara, Minoru Kanehisa, Kazuhiro W. Makabe: Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 30(1): 119-120 (2002)
16		Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa: LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Research 30(1): 402-404 (2002)
15		Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya: The KEGG databases at GenomeNet. Nucleic Acids Research 30(1): 42-46 (2002)
2000
14	EE	Minoru Kanehisa: Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only). RECOMB 2000: 176
13		Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, Kazuhiro W. Makabe: MAGEST: MAboya Gene Expression patterns and Sequence Tags. Nucleic Acids Research 28(1): 133-135 (2000)
12		Minoru Kanehisa, Susumu Goto: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 28(1): 27-30 (2000)
11		Shuichi Kawashima, Minoru Kanehisa: AAindex: Amino Acid index database. Nucleic Acids Research 28(1): 374 (2000)
10		Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND: chemical database of enzyme reactions. Nucleic Acids Research 28(1): 380-382 (2000)
1999
9		Kentaro Tomii, Minoru Kanehisa: Systematic Detection of Protein Structural Motifs. Pattern Discovery in Biomolecular Data 1999: 97-110
8		Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Research 27(1): 29-34 (1999)
7		Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa: AAindex: Amino Acid Index Database. Nucleic Acids Research 27(1): 368-369 (1999)
6		Susumu Goto, Takaaki Nishioka, Minoru Kanehisa: LIGAND database for enzymes, compounds and reactions. Nucleic Acids Research 27(1): 377-379 (1999)
1994
5		Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa: Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76
1985
4		Christian Burks, James W. Fickett, W. B. Goad, Minoru Kanehisa, F. I. Lewitter, W. P. Rindone, C. D. Swindell, C. S. Tung, H. S. Bilofsky: The GenBank nucleic acid sequence database. Computer Applications in the Biosciences 1(4): 225-233 (1985)
1984
3		Minoru Kanehisa, James W. Fickett, W. B. Goad: A relational database system for the maintenance and verification of the Los Alamos sequence library. Nucleic Acids Research 12(1): 149-158 (1984)
2		Minoru Kanehisa: Use of statistical criteria for screening potential homologies in nucleic acid sequences. Nucleic Acids Research 12(1): 203-213 (1984)
1		Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi: Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Research 12(1): 417-428 (1984)

Coauthor Index

1	Tatsuya Akutsu	[22] [23] [25] [26] [29] [30] [42]
2	Kiyoko F. Aoki-Kinoshita (Kiyoko F. Aoki)	[22] [23] [26] [29] [37] [41] [43] [44] [49]
3	Michihiro Araki	[37] [50]
4	Hideo Bannai	[28]
5	H. S. Bilofsky	[4]
6	Hidemasa Bono	[8]
7	Christian Burks	[4]
8	Chunnuan Chen	[45]
9	Charles DeLisi	[1] [45]
10	Takashi Endo	[35]
11	James W. Fickett	[3] [4]
12	Wataru Fujibuchi	[8]
13	W. B. Goad	[3] [4]
14	Susumu Goto	[6] [8] [10] [12] [15] [16] [23] [24] [30] [31] [35] [36] [37] [40] [47] [50]
15	P. Greif	[1]
16	Kosuke Hashimoto	[31] [41] [49]
17	Masahiro Hattori	[16] [24] [37] [50]
18	Mika Hirakawa	[37] [50]
19	Katsuhisa Horimoto	[38] [48]
20	Zhenjun Hu	[45]
21	Seiya Imoto	[28]
22	Masumi Itoh	[30] [35] [37] [46] [50]
23	Ming-Yang Kao	[44]
24	Toshiaki Katayama	[28] [36] [37] [50] [51]
25	Shin Kawano	[31]
26	Shuichi Kawashima	[7] [11] [13] [15] [17] [24] [35] [36] [37] [45] [50] [51]
27	Takeshi Kawashima	[13] [17]
28	P. Klein	[1]
29	Yuji Kohara	[17]
30	Andrzej Kolinski	[51]
31	Satoru Kuhara	[5]
32	F. I. Lewitter	[4]
33	Xiang-Yang Li	[44]
34	Vachiranee Limviphuvadh	[47]
35	Bolan Linghu	[45]
36	Kazuhiro W. Makabe	[13] [17]
37	Hiroshi Mamitsuka	[22] [23] [26] [29] [41] [43] [49]
38	Ali Masoudi-Nejad	[35]
39	Joe Mellor	[45]
40	Takashi Miyama	[31]
41	Satoru Miyano	[28]
42	Yuki Moriya	[35] [46]
43	Jose C. Nacher	[25] [42]
44	A. Nakaya	[20]
45	Akihiro Nakaya	[15]
46	David M. Ng	[45]
47	Hiroki Nishida	[13]
48	Takaaki Nishioka	[6] [10] [16]
49	Hiroyuki Ogata	[7] [8]
50	Shujiro Okuda	[36] [46] [50]
51	Yasushi Okuno	[16] [24]
52	Keun-Joon Park	[19]
53	Maria Pokarowska	[51]
54	Piotr Pokarowski	[51]
55	W. P. Rindone	[4]
56	Kazushige Sato	[8]
57	Tetsuya Sato	[32] [38] [48]
58	Jean-Marc Schwartz	[34] [39] [42]
59	Joshua M. Stuart	[45]
60	Masanori Suzuki	[35]
61	Takahiko Suzuki	[5]
62	C. D. Swindell	[4]
63	Toshihisa Takagi	[5]
64	Yoshinori Tamada	[28]
65	Seigo Tanaka	[47]
66	Hiroyuki Toh	[32] [38] [48]
67	Toshiaki Tokimatsu	[50]
68	Kentaro Tomii	[9]
69	Koichiro Tonomura	[35]
70	C. S. Tung	[4]
71	Kunihiro Ueda	[47]
72	Nobuhisa Ueda	[22] [23] [25] [26] [41] [43] [49]
73	Jean-Philippe Vert	[18] [20] [21] [27] [33]
74	Weizhao Wang	[44]
75	Takuji Yamada	[25] [40] [45]
76	Atsuko Yamaguchi	[22] [23] [26]
77	Yoshihiro Yamanishi	[20] [27] [32] [33] [38] [48] [50]
78	Akiyasu C. Yoshizawa	[46]

Colors in the list of coauthors